August 2008 Commit Log

Number of Commits:
74
Number of Active Developers:
4
justin 2008-08-26 05:30 Rev.: 1290

minor fix, not to use selectGraphWin when called without view

11 lines of code changed in 1 file:

justin 2008-08-26 05:15 Rev.: 1289

Now uses minmax information to gray out arrows appropriately

25 lines of code changed in 1 file:

justin 2008-08-26 05:14 Rev.: 1288

added ability to call with a filename or with a data array.

129 lines of code changed in 1 file:

justin 2008-08-26 03:39 Rev.: 1287

minor changes from mrSpikeDetector and mrEpiMovie to mlrSpikeDetector and mlrDisplayEPI

667 lines of code changed in 4 files:

justin 2008-08-26 03:38 Rev.: 1286

minor name change of functions from mrSpikeDetector and mrEpiMovie to mlrSpikeDetector and mlrDisplayEPI

2 lines of code changed in 1 file:

justin 2008-08-26 03:33 Rev.: 1285

small change so that images that have all nans dont crash the viewer

6 lines of code changed in 1 file:

justin 2008-08-26 03:28 Rev.: 1284

Preference for badVal that will be used when bringing in values with warpAffine3 when there is no corresponding point

26 lines of code changed in 2 files:

justin 2008-08-26 03:28 Rev.: 1283

use isEqualWithNans so that the lists can have nan in them

1 lines of code changed in 1 file:

justin 2008-08-26 03:27 Rev.: 1282

small fix for checking when to use next argument in list

3 lines of code changed in 1 file:

justin 2008-08-22 09:33 Rev.: 1281

if curvature is calculated, add it to the surf structure

2 lines of code changed in 1 file:

justin 2008-08-22 09:32 Rev.: 1280

surface compatibility is decided only by # of vertices, not by # of triangles. This is useful for the caret surfaces in which the atlas surface is defined to have the same number of vertices, but not necessarily the same number of tris.

2 lines of code changed in 1 file:

justin 2008-08-22 09:29 Rev.: 1279

Made these two functions view-friendly, i.e. they can now also take as arguments a view instead of a "d" structure

77 lines of code changed in 2 files:

justin 2008-08-22 09:28 Rev.: 1278

minor comment change

1 lines of code changed in 1 file:

justin 2008-08-22 09:28 Rev.: 1277

check for field viewNum correctly (otherwise the function crashed if this field didn't exist instead of simply returning false).

14 lines of code changed in 1 file:

justin 2008-08-22 09:27 Rev.: 1276

handle old surfaces that didn't have path set

5 lines of code changed in 1 file:

justin 2008-08-22 09:26 Rev.: 1275

always use next argument rather then interpret 'var','val' as var=1, val=1

3 lines of code changed in 1 file:

justin 2008-08-22 09:25 Rev.: 1274

added ability to change display string midway, and also handle loops w/in loops gracefully

74 lines of code changed in 1 file:

justin 2008-08-21 07:38 Rev.: 1273

Remove voxels that are out of the slice bounds

7 lines of code changed in 1 file:

justin 2008-08-21 07:37 Rev.: 1272

use nanmean instead of mean to handle voxels that have been nand out by motion comp or coordinate xforms

2 lines of code changed in 1 file:

justin 2008-08-21 05:07 Rev.: 1271

On output if coords filenames are set to "Same as surface" they will be changed to be the name of the display surface.

8 lines of code changed in 1 file:

eli 2008-08-20 23:49 Rev.: 1270

just updated the help

1 lines of code changed in 1 file:

justin 2008-08-20 01:20 Rev.: 1269

some header tags added that were needed by Caret

8 lines of code changed in 1 file:

justin 2008-08-20 00:43 Rev.: 1268

Initial import. Functions to convert SurfRelax to caret format and a mlr specific image header reader (reads the nifti header and associated .mat file if it exists and combines into a single header)

79 lines of code changed in 2 files:

justin 2008-08-12 02:36 Rev.: 1267

unnecessary function

0 lines of code changed in 1 file:

eli 2008-08-12 00:30 Rev.: 1266

added variable 'limval' for curvature grayscale limit

3 lines of code changed in 1 file:

justin 2008-08-11 10:21 Rev.: 1265

comment change

2 lines of code changed in 1 file:

justin 2008-08-11 10:19 Rev.: 1264

decided to change name so that it is consistent with loadSurfOFF

1 lines of code changed in 2 files:

justin 2008-08-11 10:15 Rev.: 1263

Function was not working properly because vtcs had to be transposed before saving

2 lines of code changed in 1 file:

justin 2008-08-11 10:14 Rev.: 1262

function to load surfaces from caret. takes .coord .topo pair and returns a strucutre like loadSurfOFF

0 lines of code changed in 1 file:

justin 2008-08-11 10:12 Rev.: 1261

better input argument handling + computation of surface normals if outer surface is not specified

40 lines of code changed in 1 file:

justin 2008-08-11 08:01 Rev.: 1260

Computes surface normals by averaging the normals of each surface triangle connected to each vertex.

45 lines of code changed in 1 file:

justin 2008-08-11 03:27 Rev.: 1259

changes to deal with flat/surface naming convention changes

4 lines of code changed in 1 file:

justin 2008-08-11 03:27 Rev.: 1258

makeFlat now uses mrFlatViewer to set parameters. This allows for previewing of surfaces before they are flattened. Also some code clean up and rationalizing of naming conventions.

112 lines of code changed in 1 file:

justin 2008-08-11 03:26 Rev.: 1257

usage comment change

2 lines of code changed in 1 file:

justin 2008-08-11 03:25 Rev.: 1256

minor, handle .hdr extension as well as .img

12 lines of code changed in 2 files:

justin 2008-08-11 03:24 Rev.: 1255

Changing the names of these functions to match menu items (i.e. import instead of load)

0 lines of code changed in 2 files:

justin 2008-08-11 03:24 Rev.: 1254

Changing the name of these functions to match menu item

330 lines of code changed in 2 files:

justin 2008-08-11 03:23 Rev.: 1253

Changes related to naming convention changes on surfaces/flats

3 lines of code changed in 2 files:

justin 2008-08-11 03:23 Rev.: 1252

Cleaning up naming conventions of flat/surface base fields.
isbase now validates the coordMap fields.
old base structures with old field names are automatically converted to new naming convention
viewGet/viewSet have related changes to use new naming conventions

102 lines of code changed in 3 files:

justin 2008-08-11 03:21 Rev.: 1251

Shuffling around some menu items. In particular, Load flat/surface are now called "import" to signify that they only need to be called once to load SurfRelax surfaces. Also, moved roi import into ROI menu item

16 lines of code changed in 2 files:

justin 2008-08-11 03:20 Rev.: 1250

update for new coordsMap naming conventions

3 lines of code changed in 1 file:

justin 2008-08-11 03:19 Rev.: 1249

Can now preview patches that are created from a start point with a set radius

230 lines of code changed in 1 file:

justin 2008-08-11 03:17 Rev.: 1248

utility function to set the extension of a filename

24 lines of code changed in 1 file:

justin 2008-08-11 03:17 Rev.: 1247

verbose setting in an attempt to make these tools less chatty...

36 lines of code changed in 1 file:

justin 2008-08-11 03:16 Rev.: 1246

usage notes

12 lines of code changed in 1 file:

justin 2008-08-09 07:43 Rev.: 1245

analysis with an empty "d" strucutre should not try to reconcile that "d"

1 lines of code changed in 1 file:

frakkopesto 2008-08-09 01:19 Rev.: 1244

changed patch radius to 75 from 50

2 lines of code changed in 1 file:

frakkopesto 2008-08-08 08:40 Rev.: 1243

fixed small spelling error in preallocating memory for 'wrapDir', now much faster.

2 lines of code changed in 1 file:

justin 2008-08-08 05:32 Rev.: 1242

*** empty log message ***

0 lines of code changed in 1 file:

justin 2008-08-08 05:31 Rev.: 1241

Changed some naming conventions (i.e. outerFileName to outerCoordsFileName)

6 lines of code changed in 1 file:

justin 2008-08-08 05:31 Rev.: 1240

Fixed up naming conventions so that makeFlat can be called from a surface

47 lines of code changed in 1 file:

justin 2008-08-07 03:51 Rev.: 1239

minor change to directory

4 lines of code changed in 1 file:

eli 2008-08-07 03:28 Rev.: 1238

- added smooth parameter (defaults to 2 iterations)
- big speed improvement by preallocating memory for the curvature variable
- used 3rd vertex neighbors in computing surface
- add parameter for which vertices to compute

35 lines of code changed in 1 file:

justin 2008-08-07 02:37 Rev.: 1237

replacement for evalargs. you don't have to use eval anymore, but you do haveto initalize variables

181 lines of code changed in 1 file:

justin 2008-08-07 02:02 Rev.: 1236

Function to calculate curvature on the surfaces

128 lines of code changed in 1 file:

eli 2008-08-07 01:57 Rev.: 1235

Moving mrFlatMesh files to mrFlatMesh. ***To get these changes, you will have to either cvs checkout the whole repository again, or go into mrUtilities and run cvs checkout -d mrFlatMesh mrTools-4.5/mrUtilities/mrFlatMesh***

0 lines of code changed in 35 files:

eli 2008-08-07 01:55 Rev.: 1234

Moving mrFlatMesh tools from surfUtils to mrFlatMesh directory

2304 lines of code changed in 37 files:

justin 2008-08-07 00:27 Rev.: 1233

disppercent had gotten bloated by operating system checks and checks for mrDisp. All this was unnecessary since now mrDisp.m will run even if mrDisp.c is not compiled. This boosts disppercent performance substantially (it was eating up time in loops just checking to see if mrDisp was compiled or not)

9 lines of code changed in 1 file:

justin 2008-08-06 09:34 Rev.: 1232

fixed disappearing volume -- the renderer had to be set back to painters

3 lines of code changed in 1 file:

justin 2008-08-06 09:18 Rev.: 1231

temporary fix for disappearing volume

2 lines of code changed in 1 file:

eli 2008-08-06 07:31 Rev.: 1230

read in the freeSurfer curvature estimates and write them out as VFF files

9 lines of code changed in 1 file:

justin 2008-08-06 07:23 Rev.: 1229

ability to add a number so that you can see more than the last directory

11 lines of code changed in 1 file:

justin 2008-08-06 07:23 Rev.: 1228

some filename checking

65 lines of code changed in 1 file:

eli 2008-08-06 03:09 Rev.: 1227

File needed by freesurfer_read_surf.m

13 lines of code changed in 1 file:

justin 2008-08-06 01:47 Rev.: 1226

just testing commit

4 lines of code changed in 1 file:

eli 2008-08-06 00:41 Rev.: 1225

initial importing of freesurfer conversion tools

384 lines of code changed in 4 files:

justin 2008-08-02 06:01 Rev.: 1224

return covariance matrix and turn off getr2 verbose

4 lines of code changed in 2 files:

justin 2008-08-02 06:01 Rev.: 1223

added verbose argument to turn off messages

8 lines of code changed in 1 file:

justin 2008-08-02 06:00 Rev.: 1222

Call mrQuit to quit MLR

1 lines of code changed in 1 file:

justin 2008-08-02 06:00 Rev.: 1221

minor output message change

1 lines of code changed in 1 file:

justin 2008-08-02 05:59 Rev.: 1220

Set which figure to draw uicontrols to so that if user clicks on another figure while a paramsDialog is coming up, things don't get out of whack

9 lines of code changed in 1 file:

ds 2008-08-01 07:47 Rev.: 1219

exlude mexmac files by using better command line options

1 lines of code changed in 1 file:

ds 2008-08-01 07:29 Rev.: 1218

function that parses all of the mrTools code and looks for occurrences of strings. helpful for finding things while the documentation is growing.

57 lines of code changed in 1 file:

ds 2008-08-01 07:28 Rev.: 1217

matlab grep utilities for mrSearchHelp function.

1150 lines of code changed in 2 files:

July 2008 »

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