March 2010 Commit Log

Number of Commits:
32
Number of Active Developers:
2
justin 2010-03-31 21:09 Rev.: 1677

Check for whether nav echoes have been removed

21 lines of code changed in 3 files:

justin 2010-03-31 14:13 Rev.: 1676

Calculation for lines of k-space was done inappropriately - it assumed one navigator echo. To accomodate sequences with multiple nav echoes we now check the parameter ni instead of nv

14 lines of code changed in 2 files:

justin 2010-03-31 11:55 Rev.: 1675

Fixing code to correctly drop out any reference volumes

27 lines of code changed in 2 files:

tsliu 2010-03-20 04:08 Rev.: 1674

fixed the computation of the rotation angle of the AC-PC line

3 lines of code changed in 1 file:

justin 2010-03-16 15:29 Rev.: 1673

Fix to adjustDims to handle images with more than one volume

6 lines of code changed in 1 file:

tsliu 2010-03-12 02:17 Rev.: 1672

No need to make Anal directory in the new empty directory

1 lines of code changed in 1 file:

justin 2010-03-11 21:09 Rev.: 1671

Adding ability to extract only a portion of the image

55 lines of code changed in 1 file:

justin 2010-03-11 20:23 Rev.: 1670

Removing as the same functionality was put into mrInterrogator

0 lines of code changed in 1 file:

justin 2010-03-11 16:15 Rev.: 1669

Added showing magnet coordinates

14 lines of code changed in 1 file:

justin 2010-03-11 14:11 Rev.: 1668

A simple interogator to print out coordinate information like where in the magnet a point was

0 lines of code changed in 1 file:

justin 2010-03-11 12:32 Rev.: 1667

Adds ability to view 3D volumes in different orientations (coronal/axial/saggital). Also added ability to edit volumes for possibly rerunning through volume segmentation programs to fix minor errors, but left the code un-enabled since we are looking into other options for editing volumes/surfaces

314 lines of code changed in 1 file:

justin 2010-03-11 12:30 Rev.: 1666

Minor change to use function mlrIsRunning to test whether MLR is running or not

12 lines of code changed in 1 file:

justin 2010-03-11 12:30 Rev.: 1665

Tests whether MLR is running or not

42 lines of code changed in 1 file:

justin 2010-03-10 13:31 Rev.: 1664

oops. shifted pss array in wrong direction

3 lines of code changed in 1 file:

justin 2010-03-10 11:36 Rev.: 1663

Making a fix for non-integer shifts that were not accounted for in the program fftw3rd. This adjusts the pss array to match the fact that the images were not actually shifted to exactly where they should have been, but were essentially half a voxel off in the slice dimension. The fix is to adjust the pss array to match what is in the image

41 lines of code changed in 2 files:

justin 2010-03-09 13:32 Rev.: 1662

sometimes, outputVoxSize was not a row matrix and element-wise matrix multiplication would fail. if not row matrix, then transform lines were added to fix this

3 lines of code changed in 1 file:

justin 2010-03-05 13:59 Rev.: 1661

Don't give warning if there is no preprocessing to do

3 lines of code changed in 1 file:

justin 2010-03-05 13:58 Rev.: 1660

Now you can display the overlay in the continuous mode

56 lines of code changed in 1 file:

justin 2010-03-05 13:57 Rev.: 1659

Pulling out getBaseSlice from refreshMLRDisplay so it can be reused for overlay computation by searchForVoxel

94 lines of code changed in 3 files:

justin 2010-03-05 13:56 Rev.: 1658

Small mod to message

1 lines of code changed in 1 file:

justin 2010-03-05 11:38 Rev.: 1657

Minor fix

8 lines of code changed in 1 file:

justin 2010-03-04 22:13 Rev.: 1656

Parameter for controlling whether the dialog is modal or not

11 lines of code changed in 1 file:

justin 2010-03-04 22:12 Rev.: 1655

Continuous mode search for voxel, if you have a 2D or 3D base anatom loaded then it will put up a figure so that you can move your mouse over any point on your surface and it will continuously show where each point comes from

256 lines of code changed in 1 file:

justin 2010-03-04 22:11 Rev.: 1654

Handle clean close when user hits red figure close button

1 lines of code changed in 1 file:

justin 2010-03-04 19:45 Rev.: 1653

Adding a base2base viewGet

33 lines of code changed in 1 file:

justin 2010-03-04 19:41 Rev.: 1652

Allow editing the clip as well as the range values of an overlay

7 lines of code changed in 1 file:

justin 2010-03-04 19:41 Rev.: 1651

There are viewGets for co/ph/amp that expect that the corAnal analysis name should be corAnal, but if someone renames the corAnal to say corAnal2 then these fail, making the interrogator fail. Changed them to just look for the co/amp/ph of the current analysis rather than switching the analysis -- since you should be on the corAnal analysis that you want these values from for it to work.

41 lines of code changed in 1 file:

justin 2010-03-04 19:39 Rev.: 1650

Set clip and range to min and max of overlays

10 lines of code changed in 1 file:

justin 2010-03-03 12:07 Rev.: 1649

Default output arguments

1 lines of code changed in 1 file:

justin 2010-03-02 22:48 Rev.: 1648

button for displaying nifti header

44 lines of code changed in 1 file:

justin 2010-03-02 22:47 Rev.: 1647

small fix

4 lines of code changed in 1 file:

justin 2010-03-02 22:46 Rev.: 1646

Check bounds of overlayRange

3 lines of code changed in 1 file:

February 2010 »

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