Directory mrLoadRet/Analysis/MotionComp/

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justin 2012-12-05 11:19 Rev.: 2632

Cleaning up annoying error Mathworks introduced when they removed the fourth return argument from fileparts (which we never use)

3 lines of code changed in 3 files:

• mrLoadRet/Analysis/MotionComp: motionCompBetweenScans.m (+1 -1), motionCompWithinScan.m (+1 -1), sliceTimeCorrect.m (+1 -1)

justin 2012-03-05 13:17 Rev.: 2492

Added interface for calling with a view structure

22 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: dispmotioncorrect.m (+22 -7)

eli 2011-07-31 01:01 Rev.: 2197

removed the fourth output, VERNS, of FILEPARTS because it will be removed in a future release

1 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionComp.m (+1 -1)

justin 2010-08-09 14:19 Rev.: 1705

Only getting sliceTimes if sliceTImecorrection is being applied (this avoids a confusing warning message that says that slice times may not be set correctly for your site even if you are not running sliceTimeCorrection)

9 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionComp.m (+9 -5)

justin 2010-08-07 22:27 Rev.: 1704

Don't display Applying mask message if there are no zero mask elements

1 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionCompPreprocessing.m (+1 -1)

justin 2010-05-27 17:42 Rev.: 1686

motionCompBUImrParams needed to have view variable passed in for within and between scans. full motion comp already had v passed in, so no problem. only within and between updated

2 lines of code changed in 2 files:

• mrLoadRet/Analysis/MotionComp: motionCompBetweenScans.m (+1 -1), motionCompWithinScan.m (+1 -1)

justin 2010-04-19 14:48 Rev.: 1678

Adds the ability to apply a mask (ROI) before motion compensating. This can be used if you have some crud outside your images that you want to zero out.

87 lines of code changed in 6 files:

• mrLoadRet/Analysis/MotionComp: motionComp.m (+7 -3), motionCompBetweenScans.m (+6 -2), motionCompGUImrParams.m (+14), motionCompGetMask.m (new 39), motionCompPreprocessing.m (+19 -1), motionCompWithinScan.m (+2 -1)

justin 2009-12-11 11:32 Rev.: 1580

more informative help message

1 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionCompGUImrParams.m (+1 -1)

eli 2009-06-23 02:43 Rev.: 1483

pass 'sliceTimes' to motionCompPreprocessing when preprocessing both the base scan and the target scans

1 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionComp.m (+1 -1)

eli 2009-06-20 11:20 Rev.: 1482

pass sliceTimes to motionCompPrepressoing

2 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionComp.m (+2 -1)

eli 2009-06-20 11:20 Rev.: 1481

pass in sliceTimes, rather than getting them from the view

2 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionCompPreprocessing.m (+2 -3)

eli 2009-05-29 05:03

pulled some of the motion comp preprocessing steps out of the inidividual functions and put them in a single new function called 'motionCompPreprocessing.m

636 lines of code changed in 7 files:

• mrLoadRet/Analysis/MotionComp: intensityGradCorrection.m (new 286), motionComp.m (+48 -116), motionCompBetweenScans.m (+87 -71), motionCompGUImrParams.m (+18 -32), motionCompPreprocessing.m (new 154), motionCompReconcileParams.m (+4 -2), motionCompWithinScan.m (+39 -89)

justin 2009-02-09 11:07 Rev.: 1391

removed unnecessary line that was printing out a spurious value

0 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionCompGUImrParams.m (-1)

justin 2008-11-08 11:50

fixing -kb flag

0 lines of code changed in 2 files:

• mrLoadRet/Analysis/MotionComp: motionCompGUI.fig (new)

eli 2008-05-01 02:44 Rev.: 1079

set the xaxis on the rotation plot to be the correct number of frames

3 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: dispmotioncorrect.m (+3 -1)

frakkopesto 2008-03-18 09:01 Rev.: 981

Removed a leftover disp line from previous debugging. fp

0 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionComp.m (-1)

frakkopesto 2008-03-18 08:44 Rev.: 980

Fixed indexing bug introduced with tsmooth. nFrames changed to totalFrames

4 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionComp.m (+4 -3)

justin 2008-02-21 09:03 Rev.: 965

Minor change: newView does not need to have parameter 'Volume', so all calls were changed to be v = newView

7 lines of code changed in 7 files:

• mrLoadRet/Analysis/MotionComp: dispmotioncorrect.m (+1 -1), motionComp.m (+1 -1), motionCompBetweenScans.m (+1 -1), motionCompGUI.m (+1 -1), motionCompGUImrParams.m (+1 -1), motionCompWithinScan.m (+1 -1), sliceTimeCorrect.m (+1 -1)

justin 2008-02-21 02:19 Rev.: 956

options to get params by passing in justGetParams=1 and defaultParams=1

40 lines of code changed in 2 files:

• mrLoadRet/Analysis/MotionComp: motionComp.m (+19 -2), motionCompGUImrParams.m (+21 -2)

tsliu 2007-10-12 06:40 Rev.: 687

Modified Files:
motionComp.m
fixed bug in slice time correction that generated an extra frame

0 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionComp.m (-1)

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