[root]/mrUtilities/File
Caret
(5 files, 1134 lines)
Dicom
(1 files, 79 lines)
FreeSurfer
(6 files, 507 lines)
Nifti
(24 files, 3931 lines)
Varian
(18 files, 3943 lines)
mlrImage
(17 files, 4262 lines)

| Author | Changes | Lines of Code | Lines per Change |
|---|---|---|---|
| Totals | 24 (100.0%) | 287 (100.0%) | 11.9 |
| justin | 18 (75.0%) | 260 (90.6%) | 14.4 |
| eli | 4 (16.7%) | 24 (8.4%) | 6.0 |
| david | 2 (8.3%) | 3 (1.0%) | 1.5 |
Allow for hard links
14 lines of code changed in 1 file:
Making a Caret directory
0 lines of code changed in 2 files:
Fixed check for whether talPoints exists or not
1 lines of code changed in 1 file:
Adding mlrImage directory and the start of some functions that should serve as a wrapper around cbiReadNifti functions. THis will give us more flexibility in the future to be nifti independent -- for example, we can write read/write wrappers so that we aren't limited by the 16bit image width/height parameters, which is a problem for the surface images that.
Also, fixed cbiReadNiftiHeader so that it doesn't dump an error when it can't load a header, but returns gracefully with a warning and an empty header structure
0 lines of code changed in 1 file:
Added stop criteria for searching for comon paths when linking files
1 lines of code changed in 1 file:
adding a function to link files in matlab. Works like copyfile. This may not work on other platforms (since it uses a system command: ln -s) This is used by copyNiftiFile and by importGroup to make links rather than copy whole time series
94 lines of code changed in 1 file:
if curvature is calculated, add it to the surf structure
2 lines of code changed in 1 file:
some header tags added that were needed by Caret
8 lines of code changed in 1 file:
Initial import. Functions to convert SurfRelax to caret format and a mlr specific image header reader (reads the nifti header and associated .mat file if it exists and combines into a single header)
79 lines of code changed in 2 files:
comment change
2 lines of code changed in 1 file:
decided to change name so that it is consistent with loadSurfOFF
1 lines of code changed in 2 files:
function to load surfaces from caret. takes .coord .topo pair and returns a strucutre like loadSurfOFF
0 lines of code changed in 1 file:
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0 lines of code changed in 1 file:
Modified Files:
mlrGuiSet.m mrLoadRetGUI.m refreshMLRDisplay.m
reorganized refreshMLRDisplay to remove redundant computation for speed-up
Modified Files:
drawROI.m
added polygon
3 lines of code changed in 1 file:
fixed bug related to Nifti datatype and pixdim
13 lines of code changed in 1 file:
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0 lines of code changed in 1 file:
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9 lines of code changed in 1 file:
exports a MLR overlay to SurfRelax
1 lines of code changed in 1 file:
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1 lines of code changed in 1 file:
minor changes to mrUpdateNiftiHdr
viewGet changes to get junkFramesTotal
mrInterrogator puts info at bottom of figure
split out getStimvol and loadScan
uses loadMrDefaults now
2 lines of code changed in 1 file:
(1 more)