Directory mrUtilities/File/Varian/

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Most Recent Commits

justin 2013-05-07 19:44 Rev.: 2729

Fixing bad initialization of data field. This went by unnoticed because it only is a problem for non-square data.

1 lines of code changed in 1 file:

• mrUtilities/File/Varian: getfidk.m (+1 -1)

justin 2013-01-30 15:29 Rev.: 2679

Check for bad intlv setting, now only sets back for mprage 3D sequences

3 lines of code changed in 1 file:

• mrUtilities/File/Varian: fid2xform.m (+3 -3)

justin 2012-12-18 11:47 Rev.: 2634

Checking for bad intlv setting in procpar - this should never be set to y if not an epi

7 lines of code changed in 1 file:

• mrUtilities/File/Varian: fid2xform.m (+7)

justin 2012-08-01 14:39 Rev.: 2600

Minor changes to file menus. Adding ability to display scans in mlrVol and display stimfile with editStimfile. Small fix to mlrSpikeDetector, to fix broken ok callback

12 lines of code changed in 1 file:

• mrUtilities/File/Varian: fid2xform.m (+12 -1)

justin 2012-07-17 18:26 Rev.: 2595

Ability to deal with 2d anatomies which have been aquired with shot interleaving

24 lines of code changed in 2 files:

• mrUtilities/File/Varian: fid2xform.m (+5), getfidk.m (+19 -7)

justin 2012-07-17 16:16 Rev.: 2594

EDT files are by definition complex data, so defaulting to read as complex

5 lines of code changed in 1 file:

• mrUtilities/File/Varian: readsdt.m (+5)

justin 2012-07-12 21:59 Rev.: 2590

Ability to deal with 2d anatomies which have been aquired with shot interleaving

51 lines of code changed in 2 files:

• mrUtilities/File/Varian: fid2xform.m (+12 -1), getfidk.m (+39 -4)

justin 2012-07-12 14:22 Rev.: 2588

Fixing reading of tSense acc factor

9 lines of code changed in 2 files:

• mrUtilities/File/Varian: fid2niftihdr.m (+1 -1), readprocpar.m (+8 -1)

justin 2012-06-13 23:13 Rev.: 2580

Allow reading from .par files

4 lines of code changed in 1 file:

• mrUtilities/File/Varian: readprocpar.m (+4 -2)

justin 2012-04-04 14:34 Rev.: 2502

Adding function to check epi or not by checking "cntr" field exists or not.

6 lines of code changed in 1 file:

• mrUtilities/File/Varian: fid2xform.m (+6 -1)

justin 2012-02-26 11:01 Rev.: 2490

Fixes reading for new petables.

27 lines of code changed in 1 file:

• mrUtilities/File/Varian: readpetable.m (+27 -18)

justin 2012-02-26 11:01 Rev.: 2489

number of shots should now be read from the procpar field nseg not from the petable name.

3 lines of code changed in 1 file:

• mrUtilities/File/Varian: readprocpar.m (+3)

justin 2012-01-17 21:05 Rev.: 2425

fid2nifti reads nifti extension from mrPref

2 lines of code changed in 1 file:

• mrUtilities/File/Varian: fid2nifti.m (+2 -2)

justin 2011-12-15 10:35 Rev.: 2402

Slice order for data linked to a FID

8 lines of code changed in 1 file:

• mrUtilities/File/Varian: fid2xform.m (+8)

justin 2011-10-26 22:57 Rev.: 2365

Adding ability to keep reference volumes

3 lines of code changed in 1 file:

• mrUtilities/File/Varian: fid2nifti.m (+3 -3)

justin 2011-10-19 12:19 Rev.: 2363

Adding ability to select which receiver you want to load or inf for all receivers - for Varian/Agilant fid files

11 lines of code changed in 1 file:

• mrUtilities/File/Varian: fid2nifti.m (+11 -4)

justin 2011-10-19 11:38 Rev.: 2361

adding 32 bit binary file

0 lines of code changed in 1 file:

• mrUtilities/File/Varian: getfidkraw.mexmaci (new)

justin 2011-10-04 12:12 Rev.: 2359

processed 3D files no longer need to have x-axis flipped (this only applies to pre-console upgrade data)

2 lines of code changed in 1 file:

• mrUtilities/File/Varian: fid2xform.m (+2 -9)

justin 2011-10-04 10:27 Rev.: 2358

mlrVol now clips the brightest / darkest points in an image (by default set to the top/bottom 0.2% of pixels, but can be adjusted in the GUI). This helps for display of images that have a stray bright pixel. The readout value when you mouse over points will still display the unclipped value.

getfidk gives a better warning for old files that did not have epi processing run

fid2xform has a few fixes for old data. For one, the epi is not flipped relative to the 2D/3D images, so we don't need to do that. Also, the X dimension is reversed in the old data, so needed to compensate for that

13 lines of code changed in 2 files:

• mrUtilities/File/Varian: fid2xform.m (+12 -6), getfidk.m (+1)

justin 2011-09-30 15:41 Rev.: 2346

Minor fixes to deal with bad fid files

14 lines of code changed in 1 file:

• mrUtilities/File/Varian: fid2xform.m (+14)

(92 more)